PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10520_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 579aa    MW: 64997.3 Da    PI: 6.8342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10520_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12392436554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka+ L  + eY++sL
  Neem_10520_f_1 392 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASLLVSTREYLSSL 436
                     8899********************97.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.92E-12385440No hitNo description
PROSITE profilePS5088815.224387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16388455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-14391453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9392436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MDTVFSDEIA RANFLQSVMQ TFGCTYICLW SYHQQSNCLL FSDGCYHEEN NQPISSSGSL  60
ARRFFDDYCQ SVIIPVVEYE YNGCKWMPSV YNCSSRVPGL AFKNCQEYVE LNESELHRLA  120
YTESQRLFYQ TAVFMARNTG EIELGFSGMT PVRDDFMLMK LSTFNTNKVL DQLPFHDFHT  180
CNLNQINLET EIRNLFQKDL SSQLSPVSHE LATGRPSSSS SSLRSLSIDS PTEYSNSLLF  240
NIPTTSHIPE TTLKDVPPMQ PLIPSTTSPT QEAMQAFAQL QNIQLPTQET EQAVMTRAIL  300
AVLTSPSSST SSSQAQVRLP PRYSAVSPRP SAFKNYNLAL APTTSQMRST STSTSLRAQS  360
MLKRAIAYYT RLNTARRQYM VANRPTSTQL HHMISERKRR EKLNESFQAL RSLLPPGTKK  420
DKASLLVSTR EYLSSLKAQV DDLSRRNQIL EAQLLPGAKA AANEETSASS SSSSNERVEV  480
TVTCVPESTS EWRIVDLGVT VRGECRTLDL VTSILEFLKQ VQNVSLMSIE ANTQISESSS  540
SNHVIILRLR IEGNEWEESA FKEAVRRLVA LLVTSDNNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395400ERKRRE
2396401RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451491.10.0hypothetical protein CICLE_v10007937mg
TrEMBLV4UQK00.0V4UQK0_9R
STRINGVIT_11s0016g02070.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-56bHLH family protein